Aligning two sequences
January 4, 2007
To compare only two sequences that are already known to be homologous, coming from related species ‘BLAST 2 Sequence tool can be used.
‘BLAST 2 Sequence’ utilizes the BLAST algorithm for aligning two protein or nucleotide sequences(i.e DNA-DNA or protein-protein) sequence comparison.
The resulting alignments are presented in both graphical and text form.A World Wide Web version of the program can be used interactively at the NCBI WWW site.
Options:
>>strand option: Forward strand, reverse strand or both strand
>>Parameters: Reward for a match and penalty for a mismatch
>>view options: Strandard, mismatch highlight
>>Masking colour option: Black, grey and red
Related posts:
How Machine Learning is Transforming Bioinformatics
Using NCBI and UCSC genome browser- Tutorial
Cell Biology Fundamentals for Bioinformatics
From Sample to Sequence: A Comprehensive Guide to Protein Sequencing and Bioinformatics Analysis
Basic Local Alignment Search Tool (BLAST) for bioinformatics
Revolutionizing Drug Discovery: Unveiling the Power of AI-Based Protein Structure Prediction Methods
Connecting the Dots: Bioinformatics and the Multi-Omics Approach
The Internet's Impact on Bioinformatics and Medicine: Unveiling a New Era of Digital Healthcare
OpenAI codex software can turn English instruction into Programming Code
Python via Bioinformatics Examples
Diving Deep into Bioinformatics with Artificial Intelligence: A Student's Guide
Molecular Genetics: Principles and Applications