Category: bioinformatics

Using Protein-Protein Interaction Databases Links: String DB: https://string-db.org/ IntAct: https://www.ebi.ac.uk/intact/home BioGRID: https://thebiogrid.org/ STRING: Database of known & predicted protein-protein interactions.…

Relevant websites: Protein Information Tutorial SMART (normal mode): http://smart.embl-heidelberg.de/ SMART (batch mode): http://smart.embl-heidelberg.de/smart/batch.pl HMMER search: https://www.ebi.ac.uk/Tools/hmmer/ InterProScan: https://www.ebi.ac.uk/interpro/ DTU prediction…

Managing lists of data using Excel and online tools Websites: EBI BioMart: http://useast.ensembl.org/index.html then click on the BioMart link Tutorial…

This tutorial aims to provide a comprehensive understanding of NCBI BLAST, covering basic to advanced features and practical applications. Participants…

Introduction to Protein Sequences Retrieval Overview of protein FASTA format Protein FASTA format is a standard text-based format used to…

Course Overview: This course is designed to provide students with the skills and knowledge necessary to parse and analyze BLAST…

Introduction to Text Editors in Linux Importance of text editors in bioinformatics Text editors are essential tools in bioinformatics for…

Objective: This course aims to teach students how to successfully install and manage bioinformatics software on Linux systems, focusing on…

Course Description: This course provides an in-depth understanding of using Linux commands for compressing and extracting various types of data…