Category: Guides

Course Description: This course introduces students to the principles and methods of functional annotation and enrichment analysis in bioinformatics. Students…

Installation Install R (and RStudio) R is available at the CRAN website. Upon choosing a CRAN mirror, you can download R.…

Course Description: This course provides an introduction to phylogeny and its applications in evolutionary analysis. Students will learn about the…

Introduction to NCBI, GenBank, and Bioinformatics Overview of NCBI: National Center for Biotechnology Information The National Center for Biotechnology Information…

This outline provides a structured approach to learning protein modeling with Modeller, covering basic to advanced topics and including practical…

This outline provides a comprehensive overview of UniProt, including data retrieval, analysis, integration with other tools, real-world applications, and future…

Introduction to Homology Modeling Homology modeling, also known as comparative modeling, is a computational method used to predict the three-dimensional…

Course Description: This course provides an introduction to PyMOL, a powerful tool for visualizing and analyzing molecular structures in 3D.…

Introduction to Multiple Sequence Alignment (MSA) Multiple Sequence Alignment (MSA) is a fundamental technique in bioinformatics used to align three…

Gene specific information using NCBI and genome viewers Gene Web resources: NCBI database: https://www.ncbi.nlm.nih.gov/ NCBI Gene database: https://www.ncbi.nlm.nih.gov/gene UCSC Genome…

Using Protein-Protein Interaction Databases Links: String DB: https://string-db.org/ IntAct: https://www.ebi.ac.uk/intact/home BioGRID: https://thebiogrid.org/ STRING: Database of known & predicted protein-protein interactions.…

Relevant websites: Protein Information Tutorial SMART (normal mode): http://smart.embl-heidelberg.de/ SMART (batch mode): http://smart.embl-heidelberg.de/smart/batch.pl HMMER search: https://www.ebi.ac.uk/Tools/hmmer/ InterProScan: https://www.ebi.ac.uk/interpro/ DTU prediction…

Managing lists of data using Excel and online tools Websites: EBI BioMart: http://useast.ensembl.org/index.html then click on the BioMart link Tutorial…

This tutorial aims to provide a comprehensive understanding of NCBI BLAST, covering basic to advanced features and practical applications. Participants…

Introduction to Protein Sequences Retrieval Overview of protein FASTA format Protein FASTA format is a standard text-based format used to…